Projects

A roughly chronological list of projects I have been a part of

NEID Spectroscopy

I worked extensively with the calibration pipeline to improve instrument calibration by photonic sources, and better understand how the instrument is drifting. This includes things like managing databases for massive calibration and observation data sets.
Paper on instrument behavior -> being written
Paper on Excalibur/PCA calibration -> being written

I developed a novel approach of processing z-stacked biological imaging generated from flourescense microscopy. Using ML and statistical segmentation, I built a pipeline to mask flourescing features of interest, then assemble a renderable model. Using the 3d spatial information in the masks, the features of interest are converted to meshes that are orders of magnitude lighter than the origional dataset, contain novel connectivity data, and show only the features, without being obstructed by backround structures.
Link to paper